<?xml version="1.0" encoding="utf-8"?>
<nex:nexml about="#study" generator="Open Tree API" id="study" nexmljson="http://purl.org/opentree/nexson" version="0.9" xmlns="http://www.nexml.org/2009" xmlns:nex="http://www.nexml.org/2009" xmlns:ot="http://purl.org/opentree/nexson" xmlns:xhtml="http://www.w3.org/1999/xhtml/vocab#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
 <meta xsi:type="nex:LiteralMeta" property="ot:agents">
  <agent about="#peyotl-validator" description="Open Tree NexSON validation" id="peyotl-validator" name="api.opentreeoflife.org/validate" url="https://github.com/OpenTreeOfLife/peyotl" version="0.0.4a">
   <invocation>
    <otherProperty>
     <name>pythonVersion</name>
     <value>2.7.9</value>
    </otherProperty>
    <otherProperty>
     <name>pythonImplementation</name>
     <value>CPython</value>
    </otherProperty>
   </invocation>
  </agent>
  <agent about="#opentree-curation-webapp" description="Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project." id="opentree-curation-webapp" name="OpenTree curation webapp" url="https://github.com/OpenTreeOfLife/opentree" version="0.0.0"/>
 </meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:annotationEvents">
  <annotation about="#otu-mapping-hints" dateCreated="2016-09-28T03:25:09.583Z" description="Aids for mapping study OTUs to OTT taxa" id="otu-mapping-hints" passedChecks="true" preserve="true" wasAssociatedWithAgentId="opentree-curation-webapp">
   <message code="OTU_MAPPING_HINTS" humanMessageType="NONE" severity="INFO">
    <data>
     <searchContext>Birds</searchContext>
     <substitutions>
      <substitution active="false" valid="true">
       <new/>
       <old/>
      </substitution>
     </substitutions>
     <useFuzzyMatching>true</useFuzzyMatching>
    </data>
    <refersTo top="{'$': 'meta'}"/>
   </message>
  </annotation>
  <annotation about="#supporting-files-metadata" dateCreated="2016-09-28T03:25:09.583Z" description="Describes supporting data files for this study" id="supporting-files-metadata" passedChecks="true" preserve="true" wasAssociatedWithAgentId="opentree-curation-webapp">
   <message code="SUPPORTING_FILE_INFO" humanMessageType="NONE" severity="INFO">
    <data movedToPermanentArchive="false">
     <files>
      <file filename="PASTED.tre" size="238" type="newick" url="/curator/download/supporting_files.doc.8302e9895bb36549.5041535445442e747265.tre">
       <description>Source data for tree(s) 'tree1'</description>
       <sourceForTree>tree1</sourceForTree>
      </file>
     </files>
    </data>
    <refersTo top="{'$': 'meta'}"/>
   </message>
  </annotation>
  <annotation about="#peyotl-validator-event" id="peyotl-validator-event" description="Open Tree NexSON validation" wasAssociatedWithAgentId="peyotl-validator" passedChecks="true" preserve="false">
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:posteriorSupport</data>
    <refersTo top="trees" idref="edge1" treesID="trees1" treeID="tree1" edgeID="edge1"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:posteriorSupport</data>
    <refersTo top="trees" idref="edge10" treesID="trees1" treeID="tree1" edgeID="edge10"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:posteriorSupport</data>
    <refersTo top="trees" idref="edge2" treesID="trees1" treeID="tree1" edgeID="edge2"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:posteriorSupport</data>
    <refersTo top="trees" idref="edge3" treesID="trees1" treeID="tree1" edgeID="edge3"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:posteriorSupport</data>
    <refersTo top="trees" idref="edge4" treesID="trees1" treeID="tree1" edgeID="edge4"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:posteriorSupport</data>
    <refersTo top="trees" idref="edge9" treesID="trees1" treeID="tree1" edgeID="edge9"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:comment</data>
    <refersTo top="nexml" idref="study"/>
   </message>
   <message code="MISSING_OPTIONAL_KEY" severity="WARNING">
    <data>^ot:branchLengthTimeUnit</data>
    <refersTo top="trees" idref="tree1" treesID="trees1" treeID="tree1"/>
   </message>
   <message code="UNRECOGNIZED_KEY" severity="WARNING">
    <data>^ot:nodeLabelDescription</data>
    <data>^ot:nodeLabelMode</data>
    <data>^ot:nodeLabelTimeUnit</data>
    <refersTo top="trees" idref="tree1" treesID="trees1" treeID="tree1"/>
   </message>
  </annotation>
 </meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:candidateTreeForSynthesis" datatype="xsd:string">tree1</meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:comment" datatype="xsd:string"/>
 <meta xsi:type="nex:LiteralMeta" property="ot:curatorName" datatype="xsd:string">Joseph W. Brown</meta>
 <meta href="" xsi:type="nex:ResourceMeta" rel="ot:dataDeposit"/>
 <meta xsi:type="nex:LiteralMeta" property="ot:focalClade" datatype="xsd:int">157601</meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:focalCladeOTTTaxonName" datatype="xsd:string">Loxia</meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:notIntendedForSynthesis" datatype="xsd:boolean">false</meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:studyId" datatype="xsd:string">ot_827</meta>
 <meta href="http://dx.doi.org/10.1111/j.1558-5646.2007.00172.x" xsi:type="nex:ResourceMeta" rel="ot:studyPublication"/>
 <meta xsi:type="nex:LiteralMeta" property="ot:studyPublicationReference" datatype="xsd:string">Parchman, Thomas L., Craig W. Benkman, Eduardo T. Mezquida. 2007. Coevolution between Hispaniolan crossbills and pine: does more time allow for greater phenotypic escalation at lower latitude? Evolution 61 (9): 2142-2153</meta>
 <meta xsi:type="nex:LiteralMeta" property="ot:studyYear" datatype="xsd:int">2007</meta>
 <otus about="#otus1" id="otus1">
  <otu about="#otu1" id="otu1" label="Loxia curvirostra stricklandii">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia curvirostra stricklandii</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">602511</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia curvirostra stricklandi</meta>
  </otu>
  <otu about="#otu2" id="otu2" label="Loxia curvirostra minor">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia curvirostra minor</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">602513</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia curvirostra minor</meta>
  </otu>
  <otu about="#otu3" id="otu3" label="Loxia curvirostra pusilla">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia curvirostra pusilla</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">602512</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia curvirostra pusilla</meta>
  </otu>
  <otu about="#otu4" id="otu4" label="Loxia curvirostra curvirostra">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia curvirostra curvirostra</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">438240</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia curvirostra curvirostra</meta>
  </otu>
  <otu about="#otu5" id="otu5" label="Loxia leucoptera leucoptera">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia leucoptera leucoptera</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">602508</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia leucoptera leucoptera</meta>
  </otu>
  <otu about="#otu6" id="otu6" label="Loxia megaplaga">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia megaplaga</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">3597418</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia megaplaga</meta>
  </otu>
  <otu about="#otu7" id="otu7" label="Loxia leucoptera bifasciata">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Loxia leucoptera bifasciata</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">80776</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Loxia leucoptera bifasciata</meta>
  </otu>
  <otu about="#otu8" id="otu8" label="Carduelis hornemanni">
   <meta xsi:type="nex:LiteralMeta" property="ot:originalLabel" datatype="xsd:string">Carduelis hornemanni</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottId" datatype="xsd:int">6367</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:ottTaxonName" datatype="xsd:string">Acanthis hornemanni</meta>
  </otu>
 </otus>
 <trees about="#trees1" otus="otus1" id="trees1">
  <tree about="#tree1" label="Fig. 4 (Bayesian, clock enforced)" xsi:type="nex:FloatTree" id="tree1">
   <meta xsi:type="nex:LiteralMeta" property="ot:branchLengthDescription" datatype="xsd:string"/>
   <meta xsi:type="nex:LiteralMeta" property="ot:branchLengthMode" datatype="xsd:string">ot:undefined</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:curatedType" datatype="xsd:string">Bayesian inference</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:inGroupClade" datatype="xsd:string">node2</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:nodeLabelDescription" datatype="xsd:string"/>
   <meta xsi:type="nex:LiteralMeta" property="ot:nodeLabelMode" datatype="xsd:string">ot:posteriorSupport</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:nodeLabelTimeUnit" datatype="xsd:string"/>
   <meta xsi:type="nex:LiteralMeta" property="ot:outGroupEdge" datatype="xsd:string"/>
   <meta xsi:type="nex:LiteralMeta" property="ot:specifiedRoot" datatype="xsd:string">node1</meta>
   <meta xsi:type="nex:LiteralMeta" property="ot:unrootedTree" datatype="xsd:boolean">false</meta>
   <node about="#node1" root="true" id="node1"/>
   <node about="#node2" id="node2"/>
   <node about="#node3" id="node3"/>
   <node about="#node4" id="node4"/>
   <node about="#node5" id="node5"/>
   <node about="#node6" otu="otu1" id="node6">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node7" otu="otu2" id="node7">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node8" otu="otu3" id="node8">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node9" otu="otu4" id="node9">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node10" id="node10"/>
   <node about="#node11" id="node11"/>
   <node about="#node12" otu="otu5" id="node12">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node13" otu="otu6" id="node13">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node14" otu="otu7" id="node14">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <node about="#node15" otu="otu8" id="node15">
    <meta xsi:type="nex:LiteralMeta" property="ot:isLeaf" datatype="xsd:boolean">true</meta>
   </node>
   <edge about="#edge1" source="node1" target="node2" id="edge1">
    <meta xsi:type="nex:LiteralMeta" property="ot:posteriorSupport" datatype="xsd:int">1</meta>
   </edge>
   <edge about="#edge2" source="node2" target="node3" id="edge2">
    <meta xsi:type="nex:LiteralMeta" property="ot:posteriorSupport" datatype="xsd:int">1</meta>
   </edge>
   <edge about="#edge3" source="node3" target="node4" id="edge3">
    <meta xsi:type="nex:LiteralMeta" property="ot:posteriorSupport" datatype="xsd:int">1</meta>
   </edge>
   <edge about="#edge4" source="node4" target="node5" id="edge4">
    <meta xsi:type="nex:LiteralMeta" property="ot:posteriorSupport" datatype="xsd:float">0.97</meta>
   </edge>
   <edge about="#edge5" source="node5" target="node6" id="edge5"/>
   <edge about="#edge6" source="node5" target="node7" id="edge6"/>
   <edge about="#edge7" source="node4" target="node8" id="edge7"/>
   <edge about="#edge8" source="node3" target="node9" id="edge8"/>
   <edge about="#edge9" source="node2" target="node10" id="edge9">
    <meta xsi:type="nex:LiteralMeta" property="ot:posteriorSupport" datatype="xsd:int">1</meta>
   </edge>
   <edge about="#edge10" source="node10" target="node11" id="edge10">
    <meta xsi:type="nex:LiteralMeta" property="ot:posteriorSupport" datatype="xsd:float">0.82</meta>
   </edge>
   <edge about="#edge11" source="node11" target="node12" id="edge11"/>
   <edge about="#edge12" source="node11" target="node13" id="edge12"/>
   <edge about="#edge13" source="node10" target="node14" id="edge13"/>
   <edge about="#edge14" source="node1" target="node15" id="edge14"/>
  </tree>
 </trees>
</nex:nexml>