{"sha": "142b59402741da4f1e137c40ebdffe63d66a5e08", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2016-08-17T15:20:47.005Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2016-08-17T15:20:47.005Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "PASTED.tre", "@size": 2388, "@type": "newick", "@url": "/curator/download/supporting_files.doc.ac9b60ad3c80d5c7.5041535445442e747265.tre", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge1", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge10", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge10"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge100", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge100"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge101", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge101"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge11", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge11"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge12", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge12"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge13", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge13"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge14", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge14"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge15", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge15"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge16", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge16"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge17", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge17"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge18", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge18"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge19", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge19"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge2", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge2"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge23", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge23"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge28", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge28"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge29", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge29"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge3", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge3"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge33", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge33"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge34", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge34"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge35", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge35"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge36", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge36"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge37", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge37"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge4", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge4"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge41", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge41"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge44", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge44"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge47", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge47"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge5", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge5"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge50", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge50"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge51", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge51"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge52", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge52"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge53", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge53"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge54", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge54"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge55", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge55"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge59", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge59"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge6", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge6"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge63", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge63"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge67", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge67"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge68", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge68"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge69", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge69"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge7", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge7"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge70", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge70"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge73", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge73"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge78", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge78"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge79", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge79"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge8", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge8"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge80", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge80"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge81", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge81"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge84", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge84"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge9", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge9"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge92", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge92"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:posteriorSupport"], "refersTo": {"@top": "trees", "@idref": "edge95", "@treesID": "trees1", "@treeID": "tree1", "@edgeID": "edge95"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelDescription", "^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree1"], "^ot:comment": "Tree file from original paper was lost, but MrBayes alignment/commands were not. JWB re-ran the analysis.", "^ot:curatorName": ["Joseph W. Brown"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 1058847, "^ot:focalCladeOTTTaxonName": "Paradisaeidae", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_763", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1186/1471-2148-9-235"}, "^ot:studyPublicationReference": "Irestedt, Martin, Knud A J\u00f8nsson, Jon Fjelds\u00e5, Les Christidis, Per GP Ericson. 2009. An unexpectedly long history of sexual selection in birds-of-paradise. BMC Evolutionary Biology 9 (1): 235", "^ot:studyYear": 2009, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Paradisaea apoda", "^ot:ottId": 544658, "^ot:ottTaxonName": "Paradisaea apoda"}, "otu10": {"^ot:originalLabel": "Cicinnurus regius", "^ot:ottId": 813780, "^ot:ottTaxonName": "Cicinnurus regius"}, "otu11": {"^ot:originalLabel": "Astrapia mayeri", "^ot:ottId": 143296, "^ot:ottTaxonName": "Astrapia mayeri"}, "otu12": {"^ot:originalLabel": "Astrapia stephaniae", "^ot:ottId": 23691, "^ot:ottTaxonName": "Astrapia stephaniae"}, "otu13": {"^ot:originalLabel": "Astrapia rothschildi", "^ot:ottId": 143309, "^ot:ottTaxonName": "Astrapia rothschildi"}, "otu14": {"^ot:originalLabel": "Astrapia nigra", "^ot:ottId": 23692, "^ot:ottTaxonName": "Astrapia nigra"}, "otu15": {"^ot:originalLabel": "Astrapia splendidissima", "^ot:ottId": 23690, "^ot:ottTaxonName": "Astrapia splendidissima"}, "otu16": {"^ot:originalLabel": "Paradigalla brevicauda", "^ot:ottId": 544653, "^ot:ottTaxonName": "Paradigalla brevicauda"}, "otu17": {"^ot:originalLabel": "Paradigalla carunculata", "^ot:ottId": 544655, "^ot:ottTaxonName": "Paradigalla carunculata"}, "otu18": {"^ot:originalLabel": "Epimachus fastuosus", "^ot:ottId": 551814, "^ot:ottTaxonName": "Epimachus fastuosus"}, "otu19": {"^ot:originalLabel": "Epimachus meyeri", "^ot:ottId": 499632, "^ot:ottTaxonName": "Epimachus meyeri"}, "otu2": {"^ot:originalLabel": "Paradisaea raggiana", "^ot:ottId": 499638, "^ot:ottTaxonName": "Paradisaea raggiana"}, "otu20": {"^ot:originalLabel": "Ptiloris intercedens", "^ot:ottId": 291937, "^ot:ottTaxonName": "Ptiloris intercedens"}, "otu21": {"^ot:originalLabel": "Ptiloris magnificus", "^ot:ottId": 635591, "^ot:ottTaxonName": "Ptiloris magnificus"}, "otu22": {"^ot:originalLabel": "Lophorina superba", "^ot:ottId": 187883, "^ot:ottTaxonName": "Lophorina superba"}, "otu23": {"^ot:originalLabel": "Ptiloris paradiseus", "^ot:ottId": 30732, "^ot:ottTaxonName": "Ptiloris paradiseus"}, "otu24": {"^ot:originalLabel": "Ptiloris victoriae", "^ot:ottId": 291940, "^ot:ottTaxonName": "Ptiloris victoriae"}, "otu25": {"^ot:originalLabel": "Semioptera wallacii", "^ot:ottId": 866756, "^ot:ottTaxonName": "Semioptera wallacii"}, "otu26": {"^ot:originalLabel": "Drepanornis albertisi", "^ot:ottId": 515147, "^ot:ottTaxonName": "Epimachus albertisi"}, "otu27": {"^ot:originalLabel": "Drepanornis bruijnii", "^ot:ottId": 544649, "^ot:ottTaxonName": "Drepanornis bruijnii"}, "otu28": {"^ot:originalLabel": "Seleucidis melanoleucus", "^ot:ottId": 813729, "^ot:ottTaxonName": "Seleucidis melanoleucus"}, "otu29": {"^ot:originalLabel": "Parotia helenae", "^ot:ottId": 291934, "^ot:ottTaxonName": "Parotia helenae"}, "otu3": {"^ot:originalLabel": "Paradisaea minor", "^ot:ottId": 762101, "^ot:ottTaxonName": "Paradisaea minor"}, "otu30": {"^ot:originalLabel": "Parotia lawesii", "^ot:ottId": 762097, "^ot:ottTaxonName": "Parotia lawesii"}, "otu31": {"^ot:originalLabel": "Parotia sefilata", "^ot:ottId": 291933, "^ot:ottTaxonName": "Parotia sefilata"}, "otu32": {"^ot:originalLabel": "Parotia wahnesi", "^ot:ottId": 291936, "^ot:ottTaxonName": "Parotia wahnesi"}, "otu33": {"^ot:originalLabel": "Parotia carolae", "^ot:ottId": 291931, "^ot:ottTaxonName": "Parotia carolae"}, "otu34": {"^ot:originalLabel": "Pteridophora alberti", "^ot:ottId": 291938, "^ot:ottTaxonName": "Pteridophora alberti"}, "otu35": {"^ot:originalLabel": "Manucodia ater", "^ot:ottId": 489932, "^ot:ottTaxonName": "Manucodia ater"}, "otu36": {"^ot:originalLabel": "Manucodia jobiensis", "^ot:ottId": 544651, "^ot:ottTaxonName": "Manucodia jobiensis"}, "otu37": {"^ot:originalLabel": "Manucodia chalybatus", "^ot:ottId": 1015953, "^ot:ottTaxonName": "Manucodia chalybatus"}, "otu38": {"^ot:originalLabel": "Manucodia comrii", "^ot:ottId": 499634, "^ot:ottTaxonName": "Manucodia comrii"}, "otu39": {"^ot:originalLabel": "Phonygammus keraudrenii", "^ot:ottId": 551825, "^ot:ottTaxonName": "Phonygammus keraudrenii"}, "otu4": {"^ot:originalLabel": "Paradisaea decora", "^ot:ottId": 544657, "^ot:ottTaxonName": "Paradisaea decora"}, "otu40": {"^ot:originalLabel": "Lycocorax pyrrhopterus", "^ot:ottId": 544652, "^ot:ottTaxonName": "Lycocorax pyrrhopterus"}, "otu41": {"^ot:originalLabel": "Monarcha", "^ot:ottId": 176462, "^ot:ottTaxonName": "Monarcha (genus in Deuterostomia)"}, "otu42": {"^ot:originalLabel": "Corvus", "^ot:ottId": 952596, "^ot:ottTaxonName": "Corvus"}, "otu43": {"^ot:originalLabel": "Dicrurus", "^ot:ottId": 72474, "^ot:ottTaxonName": "Dicrurus"}, "otu44": {"^ot:originalLabel": "Gymnorhina", "^ot:ottId": 613403, "^ot:ottTaxonName": "Gymnorhina"}, "otu45": {"^ot:originalLabel": "Batis", "^ot:ottId": 310378, "^ot:ottTaxonName": "Batis (genus in phylum Opisthokonta)"}, "otu46": {"^ot:originalLabel": "Passer", "^ot:ottId": 515158, "^ot:ottTaxonName": "Passer"}, "otu47": {"^ot:originalLabel": "Parus", "^ot:ottId": 515141, "^ot:ottTaxonName": "Parus"}, "otu48": {"^ot:originalLabel": "Malurus", "^ot:ottId": 901831, "^ot:ottTaxonName": "Malurus"}, "otu49": {"^ot:originalLabel": "Menura", "^ot:ottId": 73933, "^ot:ottTaxonName": "Menura"}, "otu5": {"^ot:originalLabel": "Paradisaea rubra", "^ot:ottId": 762087, "^ot:ottTaxonName": "Paradisaea rubra"}, "otu50": {"^ot:originalLabel": "Elaenia", "^ot:ottId": 474278, "^ot:ottTaxonName": "Elaenia"}, "otu51": {"^ot:originalLabel": "Thamnophilus", "^ot:ottId": 799167, "^ot:ottTaxonName": "Thamnophilus (genus in Deuterostomia)"}, "otu52": {"^ot:originalLabel": "Philepitta", "^ot:ottId": 784742, "^ot:ottTaxonName": "Philepitta"}, "otu53": {"^ot:originalLabel": "Acanthisitta", "^ot:ottId": 1085741, "^ot:ottTaxonName": "Acanthisitta"}, "otu54": {"^ot:originalLabel": "Psittacidae", "^ot:ottId": 1020130, "^ot:ottTaxonName": "Psittacidae"}, "otu6": {"^ot:originalLabel": "Paradisaea guilielmi", "^ot:ottId": 291932, "^ot:ottTaxonName": "Paradisaea guilielmi"}, "otu7": {"^ot:originalLabel": "Paradisaea rudolphi", "^ot:ottId": 499630, "^ot:ottTaxonName": "Paradisaea rudolphi"}, "otu8": {"^ot:originalLabel": "Diphyllodes magnificus", "^ot:ottId": 551810, "^ot:ottTaxonName": "Diphyllodes magnificus"}, "otu9": {"^ot:originalLabel": "Diphyllodes respublica", "^ot:ottId": 28327, "^ot:ottTaxonName": "Diphyllodes respublica"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 1 (MrBayes consensus)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:substitutionCount", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node11", "^ot:nodeLabelDescription": "", "^ot:nodeLabelMode": "ot:posteriorSupport", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@length": 0.51543, "@source": "node1", "@target": "node2", "^ot:posteriorSupport": 1}, "edge106": {"@length": 0.51543, "@source": "node1", "@target": "node107"}}, "node10": {"edge10": {"@length": 0.046948, "@source": "node10", "@target": "node11", "^ot:posteriorSupport": 1}, "edge89": {"@length": 0.222942, "@source": "node10", "@target": "node90"}}, "node101": {"edge101": {"@length": 0.066514, "@source": "node101", "@target": "node102", "^ot:posteriorSupport": 0.931152778}, "edge104": {"@length": 0.549392, "@source": "node101", "@target": "node105"}}, "node102": {"edge102": {"@length": 0.44299, "@source": "node102", "@target": "node103"}, "edge103": {"@length": 0.482357, "@source": "node102", "@target": "node104"}}, "node11": {"edge11": {"@length": 0.111371, "@source": "node11", "@target": "node12", "^ot:posteriorSupport": 1}, "edge78": {"@length": 0.055915, "@source": "node11", "@target": "node79", "^ot:posteriorSupport": 1}}, "node12": {"edge12": {"@length": 0.012576, "@source": "node12", "@target": "node13", "^ot:posteriorSupport": 0.976219444}, "edge67": {"@length": 0.013321, "@source": "node12", "@target": "node68", "^ot:posteriorSupport": 0.992313889}}, "node13": {"edge13": {"@length": 0.011326, "@source": "node13", "@target": "node14", "^ot:posteriorSupport": 0.999358333}, "edge50": {"@length": 0.006528, "@source": "node13", "@target": "node51", "^ot:posteriorSupport": 0.683480556}}, "node14": {"edge14": {"@length": 0.012395, "@source": "node14", "@target": "node15", "^ot:posteriorSupport": 0.999352778}, "edge33": {"@length": 0.00987, "@source": "node14", "@target": "node34", "^ot:posteriorSupport": 0.999747222}}, "node15": {"edge15": {"@length": 0.009976, "@source": "node15", "@target": "node16", "^ot:posteriorSupport": 0.871694444}, "edge28": {"@length": 0.02699, "@source": "node15", "@target": "node29", "^ot:posteriorSupport": 1}}, "node16": {"edge16": {"@length": 0.02694, "@source": "node16", "@target": "node17", "^ot:posteriorSupport": 1}, "edge27": {"@length": 0.040219, "@source": "node16", "@target": "node28"}}, "node17": {"edge17": {"@length": 0.017711, "@source": "node17", "@target": "node18", "^ot:posteriorSupport": 0.992433333}, "edge26": {"@length": 0.024838, "@source": "node17", "@target": "node27"}}, "node18": {"edge18": {"@length": 0.004456, "@source": "node18", "@target": "node19", "^ot:posteriorSupport": 0.862041667}, "edge23": {"@length": 0.006346, "@source": "node18", "@target": "node24", "^ot:posteriorSupport": 0.827194444}}, "node19": {"edge19": {"@length": 0.00283, "@source": "node19", "@target": "node20", "^ot:posteriorSupport": 0.962555556}, "edge22": {"@length": 0.006523, "@source": "node19", "@target": "node23"}}, "node2": {"edge105": {"@length": 0.450552, "@source": "node2", "@target": "node106"}, "edge2": {"@length": 0.105004, "@source": "node2", "@target": "node3", "^ot:posteriorSupport": 0.999794444}}, "node20": {"edge20": {"@length": 0.004444, "@source": "node20", "@target": "node21"}, "edge21": {"@length": 0.00115, "@source": "node20", "@target": "node22"}}, "node24": {"edge24": {"@length": 0.008382, "@source": "node24", "@target": "node25"}, "edge25": {"@length": 0.016215, "@source": "node24", "@target": "node26"}}, "node29": {"edge29": {"@length": 0.029136, "@source": "node29", "@target": "node30", "^ot:posteriorSupport": 1}, "edge32": {"@length": 0.047561, "@source": "node29", "@target": "node33"}}, "node3": {"edge100": {"@length": 0.089375, "@source": "node3", "@target": "node101", "^ot:posteriorSupport": 0.990308333}, "edge3": {"@length": 0.213323, "@source": "node3", "@target": "node4", "^ot:posteriorSupport": 1}}, "node30": {"edge30": {"@length": 0.027994, "@source": "node30", "@target": "node31"}, "edge31": {"@length": 0.026708, "@source": "node30", "@target": "node32"}}, "node34": {"edge34": {"@length": 0.012437, "@source": "node34", "@target": "node35", "^ot:posteriorSupport": 0.999980556}, "edge47": {"@length": 0.020854, "@source": "node34", "@target": "node48", "^ot:posteriorSupport": 0.999941667}}, "node35": {"edge35": {"@length": 0.009563, "@source": "node35", "@target": "node36", "^ot:posteriorSupport": 0.989708333}, "edge44": {"@length": 0.027597, "@source": "node35", "@target": "node45", "^ot:posteriorSupport": 1}}, "node36": {"edge36": {"@length": 0.005916, "@source": "node36", "@target": "node37", "^ot:posteriorSupport": 0.640747222}, "edge41": {"@length": 0.013756, "@source": "node36", "@target": "node42", "^ot:posteriorSupport": 0.999958333}}, "node37": {"edge37": {"@length": 0.013576, "@source": "node37", "@target": "node38", "^ot:posteriorSupport": 1}, "edge40": {"@length": 0.019782, "@source": "node37", "@target": "node41"}}, "node38": {"edge38": {"@length": 0.002148, "@source": "node38", "@target": "node39"}, "edge39": {"@length": 0.001398, "@source": "node38", "@target": "node40"}}, "node4": {"edge4": {"@length": 0.0455, "@source": "node4", "@target": "node5", "^ot:posteriorSupport": 0.878077778}, "edge99": {"@length": 0.399344, "@source": "node4", "@target": "node100"}}, "node42": {"edge42": {"@length": 0.010682, "@source": "node42", "@target": "node43"}, "edge43": {"@length": 0.016952, "@source": "node42", "@target": "node44"}}, "node45": {"edge45": {"@length": 0.026172, "@source": "node45", "@target": "node46"}, "edge46": {"@length": 0.018673, "@source": "node45", "@target": "node47"}}, "node48": {"edge48": {"@length": 0.031864, "@source": "node48", "@target": "node49"}, "edge49": {"@length": 0.032528, "@source": "node48", "@target": "node50"}}, "node5": {"edge5": {"@length": 0.109385, "@source": "node5", "@target": "node6", "^ot:posteriorSupport": 1}, "edge98": {"@length": 0.395894, "@source": "node5", "@target": "node99"}}, "node51": {"edge51": {"@length": 0.007604, "@source": "node51", "@target": "node52", "^ot:posteriorSupport": 0.643022222}, "edge66": {"@length": 0.048169, "@source": "node51", "@target": "node67"}}, "node52": {"edge52": {"@length": 0.016272, "@source": "node52", "@target": "node53", "^ot:posteriorSupport": 0.854877778}, "edge63": {"@length": 0.014195, "@source": "node52", "@target": "node64", "^ot:posteriorSupport": 0.997733333}}, "node53": {"edge53": {"@length": 0.033929, "@source": "node53", "@target": "node54", "^ot:posteriorSupport": 1}, "edge62": {"@length": 0.066163, "@source": "node53", "@target": "node63"}}, "node54": {"edge54": {"@length": 0.006785, "@source": "node54", "@target": "node55", "^ot:posteriorSupport": 0.668958333}, "edge59": {"@length": 0.044709, "@source": "node54", "@target": "node60", "^ot:posteriorSupport": 1}}, "node55": {"edge55": {"@length": 0.02023, "@source": "node55", "@target": "node56", "^ot:posteriorSupport": 1}, "edge58": {"@length": 0.023099, "@source": "node55", "@target": "node59"}}, "node56": {"edge56": {"@length": 0.014516, "@source": "node56", "@target": "node57"}, "edge57": {"@length": 0.018233, "@source": "node56", "@target": "node58"}}, "node6": {"edge6": {"@length": 0.054556, "@source": "node6", "@target": "node7", "^ot:posteriorSupport": 0.999994444}, "edge95": {"@length": 0.053309, "@source": "node6", "@target": "node96", "^ot:posteriorSupport": 0.999261111}}, "node60": {"edge60": {"@length": 0.009641, "@source": "node60", "@target": "node61"}, "edge61": {"@length": 0.00889, "@source": "node60", "@target": "node62"}}, "node64": {"edge64": {"@length": 0.039475, "@source": "node64", "@target": "node65"}, "edge65": {"@length": 0.055986, "@source": "node64", "@target": "node66"}}, "node68": {"edge68": {"@length": 0.013222, "@source": "node68", "@target": "node69", "^ot:posteriorSupport": 0.939288889}, "edge77": {"@length": 0.067758, "@source": "node68", "@target": "node78"}}, "node69": {"edge69": {"@length": 0.028448, "@source": "node69", "@target": "node70", "^ot:posteriorSupport": 1}, "edge76": {"@length": 0.062646, "@source": "node69", "@target": "node77"}}, "node7": {"edge7": {"@length": 0.063462, "@source": "node7", "@target": "node8", "^ot:posteriorSupport": 1}, "edge92": {"@length": 0.032359, "@source": "node7", "@target": "node93", "^ot:posteriorSupport": 0.999491667}}, "node70": {"edge70": {"@length": 0.00797, "@source": "node70", "@target": "node71", "^ot:posteriorSupport": 0.982030556}, "edge73": {"@length": 0.00495, "@source": "node70", "@target": "node74", "^ot:posteriorSupport": 0.599266667}}, "node71": {"edge71": {"@length": 0.003261, "@source": "node71", "@target": "node72"}, "edge72": {"@length": 0.004841, "@source": "node71", "@target": "node73"}}, "node74": {"edge74": {"@length": 0.016654, "@source": "node74", "@target": "node75"}, "edge75": {"@length": 0.0205, "@source": "node74", "@target": "node76"}}, "node79": {"edge79": {"@length": 0.019792, "@source": "node79", "@target": "node80", "^ot:posteriorSupport": 0.979102778}, "edge88": {"@length": 0.12386, "@source": "node79", "@target": "node89"}}, "node8": {"edge8": {"@length": 0.013705, "@source": "node8", "@target": "node9", "^ot:posteriorSupport": 0.674769444}, "edge91": {"@length": 0.210135, "@source": "node8", "@target": "node92"}}, "node80": {"edge80": {"@length": 0.040917, "@source": "node80", "@target": "node81", "^ot:posteriorSupport": 1}, "edge87": {"@length": 0.069618, "@source": "node80", "@target": "node88"}}, "node81": {"edge81": {"@length": 0.007548, "@source": "node81", "@target": "node82", "^ot:posteriorSupport": 0.995177778}, "edge84": {"@length": 0.01091, "@source": "node81", "@target": "node85", "^ot:posteriorSupport": 0.921236111}}, "node82": {"edge82": {"@length": 0.032629, "@source": "node82", "@target": "node83"}, "edge83": {"@length": 0.051127, "@source": "node82", "@target": "node84"}}, "node85": {"edge85": {"@length": 0.035213, "@source": "node85", "@target": "node86"}, "edge86": {"@length": 0.032089, "@source": "node85", "@target": "node87"}}, "node9": {"edge9": {"@length": 0.016648, "@source": "node9", "@target": "node10", "^ot:posteriorSupport": 0.986994444}, "edge90": {"@length": 0.188487, "@source": "node9", "@target": "node91"}}, "node93": {"edge93": {"@length": 0.228953, "@source": "node93", "@target": "node94"}, "edge94": {"@length": 0.183363, "@source": "node93", "@target": "node95"}}, "node96": {"edge96": {"@length": 0.311422, "@source": "node96", "@target": "node97"}, "edge97": {"@length": 0.310271, "@source": "node96", "@target": "node98"}}}, "nodeById": {"node1": {"@root": true}, "node10": {}, "node100": {"@otu": "otu49"}, "node101": {}, "node102": {}, "node103": {"@otu": "otu50"}, "node104": {"@otu": "otu51"}, "node105": {"@otu": "otu52"}, "node106": {"@otu": "otu53"}, "node107": {"@otu": "otu54"}, "node11": {}, "node12": {}, "node13": {}, "node14": {}, "node15": {}, "node16": {}, "node17": {}, "node18": {}, "node19": {}, "node2": {}, "node20": {}, "node21": {"@otu": "otu1"}, "node22": {"@otu": "otu2"}, "node23": {"@otu": "otu3"}, "node24": {}, "node25": {"@otu": "otu4"}, "node26": {"@otu": "otu5"}, "node27": {"@otu": "otu6"}, "node28": {"@otu": "otu7"}, "node29": {}, "node3": {}, "node30": {}, "node31": {"@otu": "otu8"}, "node32": {"@otu": "otu9"}, "node33": {"@otu": "otu10"}, "node34": {}, "node35": {}, "node36": {}, "node37": {}, "node38": {}, "node39": {"@otu": "otu11"}, "node4": {}, "node40": {"@otu": "otu12"}, "node41": {"@otu": "otu13"}, "node42": {}, "node43": {"@otu": "otu14"}, "node44": {"@otu": "otu15"}, "node45": {}, "node46": {"@otu": "otu16"}, "node47": {"@otu": "otu17"}, "node48": {}, "node49": {"@otu": "otu18"}, "node5": {}, "node50": {"@otu": "otu19"}, "node51": {}, "node52": {}, "node53": {}, "node54": {}, "node55": {}, "node56": {}, "node57": {"@otu": "otu20"}, "node58": {"@otu": "otu21"}, "node59": {"@otu": "otu22"}, "node6": {}, "node60": {}, "node61": {"@otu": "otu23"}, "node62": {"@otu": "otu24"}, "node63": {"@otu": "otu25"}, "node64": {}, "node65": {"@otu": "otu26"}, "node66": {"@otu": "otu27"}, "node67": {"@otu": "otu28"}, "node68": {}, "node69": {}, "node7": {}, "node70": {}, "node71": {}, "node72": {"@otu": "otu29"}, "node73": {"@otu": "otu30"}, "node74": {}, "node75": {"@otu": "otu31"}, "node76": {"@otu": "otu32"}, "node77": {"@otu": "otu33"}, "node78": {"@otu": "otu34"}, "node79": {}, "node8": {}, "node80": {}, "node81": {}, "node82": {}, "node83": {"@otu": "otu35"}, "node84": {"@otu": "otu36"}, "node85": {}, "node86": {"@otu": "otu37"}, "node87": {"@otu": "otu38"}, "node88": {"@otu": "otu39"}, "node89": {"@otu": "otu40"}, "node9": {}, "node90": {"@otu": "otu41"}, "node91": {"@otu": "otu42"}, "node92": {"@otu": "otu43"}, "node93": {}, "node94": {"@otu": "otu44"}, "node95": {"@otu": "otu45"}, "node96": {}, "node97": {"@otu": "otu46"}, "node98": {"@otu": "otu47"}, "node99": {"@otu": "otu48"}}}}}}}}, "branch2sha": {"master": "142b59402741da4f1e137c40ebdffe63d66a5e08"}, "commentHTML": "
Tree file from original paper was lost, but MrBayes alignment/commands were not. JWB re-ran the analysis.
", "duplicateStudyIDs": [], "shardName": "phylesystem-0", "versionHistory": [{"id": "1929954972dff01726db98ce7593a584d51d81ef", "author_name": "Benjamin Redelings", "author_email": "benjamin.redelings@gmail.com", "date": "Tue, 16 Jan 2018 10:42:59 -0500", "date_ISO_8601": "2018-01-16 10:42:59 -0500", "relative_date": "6 years ago", "message_subject": "Sync from phylesystem-1 using 'cp'."}]}